Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 835
2005
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Long-range Electrostatic Interactions in Molecular Dynamics: An Endothelin-1 Case Study
Journal of Biomolecular Structure and Dynamics, year: 2005, volume: 23, edition: 2
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Mechanismus bakteriální oxidace pyritu, dopady v ekologii a biohydrometalurgii
IX. Pracovní setkání biochemiků a molekulárních biologů, year: 2005
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Molecular Dynamics Study of Protein-Ligand Interactions
Cellular and Molecular Biology Letters, year: 2005
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Molecular modeling and site-directed mutagenesis of plant chloroplast monogalactosyldiacylglycerol synthase reveal critical residues for activity
J. Biol. Chem., year: 2005, volume: 280, edition: 41
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Multienzyme electrochemical array sensor for determination of phenols and pesticides
Talanta, year: 2005, volume: 65, edition: 2
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Mutagenesis of PA-IIL lectin from human pathogen Pseudomonas aeruginosa and its effect on the saccharide specificity
European Congress of Young Chemists, year: 2005
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New insight into mediator function of yeast Rad52 protein
XXIIth International Conference on Yeast Genetics and Molecular Biology, year: 2005
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New NMR Methods for Conformational Studies of Biomolecules
Materials Structure, year: 2005, volume: 12, edition: 1
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NEW TOOLS FOR AN ANALYSIS OF EXPERIMENTAL (NMR) AND THEORETICAL (MD) DATA
Konference mladých vědeckých pracovníků "Strukturní biofyzika makromolekul", year: 2005
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No Proton - No problem. Non-protonated Nuclei in NMR Studies of Nucleic Acids
XXI International Conference on MagneticResonance in Biological Systems-Abstracts, year: 2005