OverProt: secondary structure consensus for protein families
| Authors | |
|---|---|
| Year of publication | 2022 |
| Type | Article in Periodical |
| Magazine / Source | Bioinformatics |
| MU Faculty or unit | |
| Citation | |
| Web | https://academic.oup.com/bioinformatics/article/38/14/3648/6604272 |
| Doi | http://dx.doi.org/10.1093/bioinformatics/btac384 |
| Keywords | protein family; OverProt |
| Description | Every protein family has a set of characteristic secondary structures. However, due to individual variations, a single structure is not enough to represent the whole family. OverProt can create a secondary structure consensus, showing the general fold of the family as well as its variation. Our server provides precomputed results for all CATH superfamilies and user-defined computations, visualized by an interactive viewer, which shows the secondary structure element type, length, frequency of occurrence, spatial variability and beta-connectivity. |
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