eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems
| Autoři | |
|---|---|
| Rok publikování | 2022 |
| Druh | Článek ve sborníku |
| Konference | 20th International Conference on Computational Methods in Systems Biology |
| Fakulta / Pracoviště MU | |
| Citace | TROJÁK, Matej, David ŠAFRÁNEK, Branislav BROZMANN a Luboš BRIM. eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems. Online. In I. Petre, A. Păun. 20th International Conference on Computational Methods in Systems Biology. LNBI 13447. Neuveden: Springer, 2022, s. 302-309. ISBN 978-3-031-15033-3. Dostupné z: https://dx.doi.org/10.1007/978-3-031-15034-0_17. |
| www | https://doi.org/10.1007/978-3-031-15034-0_17 |
| Doi | http://dx.doi.org/10.1007/978-3-031-15034-0_17 |
| Klíčová slova | rule-based modelling; regulations; SBML; Galaxy tool |
| Popis | eBCSgen is a software tool for developing and analysing models written in Biochemical Space Language (BCSL). BCSL is a rule-based language designed for the description of biological systems with rewriting rules in the form of behavioural patterns. This tool paper describes a new version of the tool, implementing the support for regulations, a mechanism suitable for reducing the branching behaviour of concurrent systems. Additionally, the presented version provides export to SBML, and support for CTL model checking. The paper artefact is available via https://doi.org/10.5281/zenodo.6644973. |
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