eBCSgen: A Software Tool for Biochemical Space Language

• Autoři: TROJÁK Matej; ŠAFRÁNEK David; MERTOVÁ Lukrécia; BRIM Luboš
• Rok publikování: 2020
• Druh: Článek ve sborníku
• Konference: 18th International Conference on Computational Methods in Systems Biology, CMSB 2020
• Fakulta / Pracoviště MU: Fakulta informatiky
• www: https://doi.org/10.1007/978-3-030-60327-4_20
• Doi: http://dx.doi.org/10.1007/978-3-030-60327-4_20
• Klíčová slova: rule-based modelling; parameter synthesis; static analysis; Galaxy tool
• Popis: eBCSgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL). BCSL is a rule-based language for biological systems designed to combine compact description with a specific level of abstraction which makes it accessible to users from life sciences. Currently, eBCSgen represents the only tool completely supporting BCSL. It has the form of a command line interface which is integrated into Galaxy – a web-based bioinformatics platform automating data-driven and model-based analysis pipelines

Související projekty

• Diskrétní bifurkační analýza reaktivních systémů
• Rozsáhlé výpočetní systémy: modely, aplikace a verifikace IX