Acquiarium 2009

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This publication doesn't include Faculty of Sports Studies. It includes Faculty of Informatics. Official publication website can be found on muni.cz.

Authors	MATULA Pavel MAŠKA Martin DANĚK Ondřej VINKLER Marek
Year of publication	2009
MU Faculty or unit	Faculty of Informatics
Web	http://cbia.fi.muni.cz/acquiarium/
Description	Acquiarium is free software for solving the common pipeline of many spatial cell studies using fluorescence microscopy. It addresses image capture, raw image correction, image segmentation, quantification of segmented objects and their spatial arrangement, volume rendering, and statistical evaluation. The software is designed for processing of a collection of many 3D images. It can be used for analysis of a collection of 2D images or time lapse series of 2D or 3D images as well. It has a modular design and is extensible via plug-ins. The main improvements in the year 2009 are described on http://cbia.fi.muni.cz/projects/acquiarium-versions.html
Related projects:	Determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images