BioDiVinE: A Tool for Parallel Analysis of Multi-Affine ODE Models

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Authors

BARNAT Jiří BRIM Luboš ČERNÁ Ivana DRAŽAN Sven FABRIKOVÁ Jana LÁNÍK Jan ŠAFRÁNEK David

Year of publication 2009
Type Article in Proceedings
Conference Computational Mehotds in Systems Biology: Abstract of the Posters
MU Faculty or unit

Faculty of Informatics

Citation
Field Informatics
Keywords parallel model checking; ordinary differential equations; multi-affine systems
Description This work focuses on analysis of dynamic systems describing functionality of biological networks. In particular, the biological model is considered as a system of multi-affine ODEs. The continuous state space of the dynamic system is abstracted into a finite automaton by employing the rectangular abstraction method. The analysis is performed on abstracted models. In particular, the state space reachable from given initial conditions (initial concentration of species) is automatically generated and analysed.
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