R/Bioconductor package for identification of triplex-forming sequences

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Authors	HON Jiří LEXA Matej MARTÍNEK Tomáš RAJDL Kamil
Year of publication	2013
MU Faculty or unit	Faculty of Informatics
Web	http://bioconductor.org/packages/release/bioc/html/triplex.html
Description	This package provides functions for identification and visualization of potential intramolecular triplex patterns in DNA sequence. The main functionality is to detect the positions of subsequences capable of folding into an intramolecular triplex (H-DNA) in a much larger sequence. The potential H-DNA (triplexes) should be made of as many cannonical nucleotide triplets as possible. The package includes visualization showing the exact base-pairing in 1D, 2D or 3D.
Related projects:	Zastoupení ČR v European Research Consortium for Informatics and Mathematics